Library

SBML2HYB: a Python interface for SBML compatible hybrid modeling

Authors: Jose Pinto, Rafael S. Costa, Leonardo Alexandre, Joao Ramos, Rui Oliveira

Status: Published

Year: 2023

Journal: Bioinformatics

Volume/Issue: 39

Pages: btad044

URL/DOI: https://doi.org/10.1093/bioinformatics/btad044

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Development of an Automated Online Flow Cytometry Method to Quantify Cell Density and Fingerprint Bacterial Communities

Authors: Juan López-Gálvez, Konstanze Schiessl, Michael D. Besmer, Carmen Bruckmann, Hauke Harms and Susann Müller

Status: Published

Year: 2023

Journal: Cells

Volume/Issue: 12/12

Pages: 1559

URL/DOI: https://doi.org/10.3390/cells12121559

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Species composition determines bioplastics production in photosynthetic microbiomes: strategy to enrich cyanobacteria PHB-producers

Authors: Beatriz Altamira-Algarra, Artai Lage, Joan García, Eva Gonzalez-Flo

Status: Published

Year: 2023

Journal: bioRxiv

URL/DOI: https://doi.org/10.1101/2023.05.30.542808

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Exploiting synergies between microbial electrochemical technologies and synthetic biology

Authors: Bin Lai, Jens Krömer, Federico Aulenta, Hui Wu, Pablo Ivan Nikel

Status: Published

Year: 2023

Journal: Microbial Biotechnology

Volume/Issue: 16

Pages: 488

URL/DOI: https://doi.org/10.1111/1751-7915.14208

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GALLANT: a standardized workflow for multi strain genome-scale metabolic modeling

Authors: David San León Granado, Juan Nogales Enrique

Status: Published

Year: 2023

URL/DOI: https://f1000research.com/posters/12-717

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A promising Computational pipeline for microbial consortia analysis using Genome-scale metabolic models

Authors: David San León, Beatriz Altamira-Algarra, Eva González-Flo, Joan García, Juan Nogales

Status: Published

Year: 2023

URL/DOI: https://zenodo.org/records/8171140

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Insights on Metabolic Features of Bacillus subtilis Based on Multistrain Genome-Scale Metabolic Modeling

Authors: David San León Granado, Blas Blázquez, Juan Nogales

Status: Published

Year: 2023

URL/DOI: https://zenodo.org/records/8171332

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A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks

Authors: José Pinto, Mykaella Mestre, J. Ramos, Rafael S.Costa, Gerald Striedner, Rui Oliveira

Status: Published

Year: 2022

Journal: Computers & Chemical Engineering

Volume/Issue: 165

Pages: 107952

URL/DOI: https://doi.org/10.1016/j.compchemeng.2022.107952

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The Impact of the Antibiotic Fosfomycin on Wastewater Communities Measured by Flow Cytometry

Authors: Shuang Li, Zishu Liu, Christine Süring, Luyao Chen, Susann Müller, Ping Zeng

Status: Published

Year: 2022

Journal: Sec. Systems Microbiology

Volume/Issue: 12

Pages: 737831

URL/DOI: https://doi.org/10.3389/fmicb.2021.737831

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Automatic, fast, hierarchical, and non-overlapping gating of flow cytometric data with flowEMMi v2

Authors: Carmen Bruckmann, Susann Müller, Christian Höner zu Siederdissen

Status: Published

Year: 2022

Journal: Computational and Structural Biotechnology Journal

Volume/Issue: 20

Pages: 6473-6489

URL/DOI: https://doi.org/10.1016/j.csbj.2022.11.033

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Enhancing tellurite and selenite bioconversions by overexpressing a methyltransferase from Aromatoleum sp. CIB

Authors: Elena Alonso-Fernandes, Helga Fernández-Llamosas, Irene Cano, Cristina Serrano-Pelejero, Laura Castro, Eduardo Díaz, Manuel Carmona

Status: Published

Year: 2022

Journal: Microbial Biotechnology

Volume/Issue: 16/5

URL/DOI: https://doi.org/10.1111/1751-7915.14162

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Novel approaches to energize microbial biocatalysts

Authors: Gonzalo Durante-Rodríguez, Manuel Carmona, Eduardo Díaz

Status: Published

Year: 2022

Journal: Environmental Microbiology

Volume/Issue: 25

Pages: 217

URL/DOI: https://doi.org/10.1111/1462-2920.16254

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Enhancing biodesulfurization by engineering a synthetic dibenzothiophene mineralization pathway

Authors: Igor Martínez, Magdy El-Said Mohamed, José Luis García, Eduardo Díaz

Status: Published

Year: 2022

Journal: Frontiers in Microbiology

Volume/Issue: 13

URL/DOI: https://doi.org/10.3389/fmicb.2022.987084

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Monitoring PHB production in Synechocystis sp. with hyperspectral images

Authors: Francisco Rodríguez Lorenzo, Miguel Placer Lorenzo, Luz Herrero Castilla, Sandra Iglesias, Santiago Gómez, Juan Manuel Fernández Montenegro, Estel Rueda, Rubén Diez-Montero, Joan Garcia, Eva Gonzalez-Flo, Juan Antonio Álvarez Rodríguez

Status: Published

Year: 2022

Journal: Water Science & Tchnology

Volume/Issue: Volume 86, Issue 1

Pages: 211–226

URL/DOI: https://doi.org/10.2166/wst.2022.194

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Current advances in engineering cyanobacteria and their applications for photosynthetic butanol production

Authors: Xufeng Liu, Hao Xie, Stamatina Roussou, Peter Lindblad

Status: Published

Year: 2022

Journal: Current Opinion in Biotechnology

Volume/Issue: 73

Pages: 143-150

URL/DOI: https://doi.org/10.1016/j.copbio.2021.07.014

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